आई.सी.एम.आर.- राष्ट्रीय व्यावसायिक स्वास्थ्य संस्थान, ICMR- National Institute Of
Occupational Health अहमदाबाद - 380016 भारत. Ahmedabad - 380016 India.
व्यावसायिक स्वास्थ्य के लिए डब्ल्यूएचओ का सहयोग केंद्र. WHO Collaborating Center for
Occupational Health

Mr Ram Shankar Barai

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  • Mr Ram Shankar Barai

Mr. Ram Shankar Barai

Biological Sciences Division
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Academic Qualification

  • M. Sc. (Bioinformatics), Chhatrapati Shahu Ji Maharaj University Kanpur, Uttar Pradesh

Research Interest

  • Computational biology (Multiomics)
  • Data science and databases, Health informatics and Artificial intelligence/ Machine learning
  • Therapeutic agent development

Membership / Affliation

  • NIL

Fellowship/Awards

  • NIL

Publications

  • Rahate K, Arshi A, Barai R S, Chakraborty S, Idicula-Thomas S. EpiCandIn: An open online resource for epidemiology of Candida infections in India. Indian J Med Res 159 (1). Doi: 10.25259/ijmr_886_23
  • Chakraborty S, Askari M, Barai RS, Idicula-Thomas S. PBITV3: A robust and comprehensive tool for screening pathogenic proteomes for drug targets and prioritizing vaccine candidates. Protein Sci. 2024 Feb;33(2):e4892. doi: 10.1002/pro.4892. PMID: 38168465; PMCID: PMC10804677.
  • Kundu I, Sharma M, Barai RS, Pokar K, Idicula-Thomas S. GeDiPNet: Online resource of curated gene-disease associations for polypharmacological targets discovery. Genes & Diseases 2023 May 10(3), 647-649. doi: 10.1016/j.gendis.2022.05.034. PMID: 37396547; PMCID: PMC10308100.
  • Gawde U, Chakraborty S, Waghu FH, Barai RS, Khanderkar A, Indraguru R, Shirsat T, Idicula-Thomas S. CAMPR4: a database of natural and synthetic antimicrobial peptides. Nucleic Acids Res. 2023 Jan 6;51(D1): D377-D383. doi: 10.1093/nar/gkac933. PMID: 36370097; PMCID: PMC9825550.
  • Gawde U, Hegde P, Desai K, Barai RS, Shekhar BR, Das DK, Idicula-Thomas S. Multimorbidity landscape of schizophrenia: Insights from meta-analysis of genome wide association studies. Schizophr Res. 2022 May; 243:214-216. doi: 10.1016/j.schres.2022.03.013. Epub 2022 Apr 20. PMID: 35461043.
  • Khan SA, Kulkarni VR, Shah RS, Gokral JS, Meherji PK, Vadigoppula AD, Patil AD, Bhurke AV, Kokate PP, Barai RS, Surve SR, Modi DN, Mahale SD, Gajbhiye RK. Clinical Presentations and Semen Characteristics of Men Attending the Secondary Referral Infertility Clinic at Mumbai, India. J Hum Reprod Sci. 2021 Oct-Dec;14(4):356-364. doi: 10.4103/jhrs.jhrs_93_21. Epub 2021 Dec 31. PMID: 35197680; PMCID: PMC8812386.
  • Sharma M, Kundu I, Barai RS, Bhaye S, Desai K, Pokar K, Idicula-Thomas S. Enrichment analyses of diseases and pathways associated with precocious puberty using PrecocityDB. Sci Rep. 2021 Feb 18;11(1):4203. doi: 10.1038/s41598-021-83446-z. PMID: 33602974; PMCID: PMC7893021.
  • Mukherjee S, Kundu I, Askari M, Barai RS, Venkatesh KV, Idicula-Thomas S. Exploring the druggable proteome of Candida species through comprehensive computational analysis. Genomics. 2021 Mar;113(2):728-739. doi: 10.1016/j.ygeno.2020.12.040. Epub 2021 Jan 20. PMID: 33484798.
  • Sharma M, Barai RS, Kundu I, Bhaye S, Pokar K, Idicula-Thomas S. PCOSKBR2: a database of genes, diseases, pathways, and networks associated with polycystic ovary syndrome. Sci Rep. 2020 Sep 7;10(1):14738. doi: 10.1038/s41598-020-71418-8. PMID: 32895427; PMCID: PMC7477240.
  • Shende G, Haldankar H, Barai RS, Bharmal MH, Shetty V, Idicula-Thomas S. PBIT: Pipeline Builder for Identification of drug Targets for infectious diseases. Bioinformatics. 2017 Mar 15;33(6):929-931. doi: 10.1093/bioinformatics/btw760. PMID: 28039165.
  • Waghu FH, Barai RS, Idicula-Thomas S. Leveraging family-specific signatures for AMP discovery and high-throughput annotation. Sci Rep. 2016 Apr 19;6:24684. doi: 10.1038/srep24684. PMID: 27089856; PMCID: PMC4836297.
  • Jacob S, Nayak S, Kakar R, Chaudhari UK, Joshi D, Vundinti BR, Fernandes G, Barai RS, Kholkute SD, Sachdeva G. A triad of telomerase, androgen receptor and early growth response 1 in prostate cancer cells. Cancer Biol Ther. 2016 Apr 2;17(4):439-48. doi: 10.1080/15384047.2016.1156255. PMID: 27003515; PMCID: PMC4910915.
  • Joseph S, Barai RS, Bhujbalrao R, Idicula-Thomas S. PCOSKB: A KnowledgeBase on genes, diseases, ontology terms and biochemical pathways associated with PolyCystic Ovary Syndrome. Nucleic Acids Res. 2016 Jan 4;44(D1):D1032-5. doi: 10.1093/nar/gkv1146. Epub 2015 Nov 17. PMID: 26578565; PMCID: PMC4702829.
  • Waghu FH, Barai RS, Gurung P, Idicula-Thomas S. CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides. Nucleic Acids Res. 2016 Jan 4;44(D1):D1094-7. doi: 10.1093/nar/gkv1051. Epub 2015 Oct 13. PMID: 26467475; PMCID: PMC4702787.
  • Jacob S, Nayak S, Fernandes G, Barai RS, Menon S, Chaudhari UK, Kholkute SD, Sachdeva G. Androgen receptor as a regulator of ZEB2 expression and its implications in epithelial-to-mesenchymal transition in prostate cancer. Endocr Relat Cancer. 2014 May 8;21(3):473-86. doi: 10.1530/ERC-13-0514. PMID: 24812058.
  • Waghu FH, Gopi L, Barai RS, Ramteke P, Nizami B, Idicula-Thomas S. CAMP: Collection of sequences and structures of antimicrobial peptides. Nucleic Acids Res. 2014 Jan;42(Database issue):D1154-8. doi: 10.1093/nar/gkt1157. Epub 2013 Nov 21. PMID: 24265220; PMCID: PMC3964954.
  • Sonawani A, Nilawe P, Barai RS, Idicula-Thomas S. ClotBase: a knowledgebase on proteins involved in blood coagulation. Blood. 2010 Aug 5;116(5):855-6. doi: 10.1182/blood-2010-04-282616. PMID: 20688969.
  • Thomas S, Karnik S, Barai RS, Jayaraman VK, Idicula-Thomas S. CAMP: a useful resource for research on antimicrobial peptides. Nucleic Acids Res. 2010 Jan;38(Database issue):D774-80. doi: 10.1093/nar/gkp1021. Epub 2009 Nov 18. PMID: 19923233; PMCID: PMC2808926.
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